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RESEARCH PAPER · Nature Communications · 2021

Coupling complementary strategy to flexible graph neural network for quick discovery of coformer in diverse co-crystal materials

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Coupling complementary strategy to flexible graph neural network for quick discovery of coformer in diverse co-crystal materialsOriginalD-P11 血中NBD-グルコサミンの蛍光について0Molecular set transformer: attending to the co-crystals in the Cambridge structural database29Deep learning modeling strategy for material science: from natural materials to metamaterials29Emerging Landscape of Computational Modeling in Pharmaceutical Development48Minoxidil Multi-Component Crystals with Aromatic Carboxylic Acids: Theoretical Calculation and Structural Analysis16Spectral Encoder to Extract the Features of Near-Infrared Spectra for Multivariate Calibration31TG-GNN: Transformer based Geometric enhancement graph neural network for molecular property prediction4Biomarkers discovery for endometrial cancer: A graph convolutional sample network method6Cocrystal Prediction of Bexarotene by Graph Convolution Network and Bioavailability Improvement28Rational Screening of Cocrystals using Thermal Analysis: Benchmarking on Energetic Materials25iGROWL: Improved Group Detection With Link Prediction7Prediction and Construction of Energetic Materials Based on Machine Learning Methods53Ai-Enhanced Chemical Paradigm: From Molecular Graphs to Accurate Prediction and Mechanism0High-throughput design of energetic molecules45General Graph Neural Network-Based Model To Accurately Predict Cocrystal Density and Insight from Data Quality and Feature Representation30Neural Network Prediction Model of Cocrystal Melting Temperature Based on Molecular Descriptors and Graphs15Virtual Screening, Structural Analysis, and Formation Thermodynamics of Carbamazepine Cocrystals39Accelerated prediction of perovskite material properties with classical machine learning and graph neural network6Searching for the analogues of 1,1-dinitro-2,2-diamino ethylene (FOX-7) by high-throughput computation and machine learning11Exploring the Supramolecular Interactions and Thermal Stability of Dapsone:Bipyridine Cocrystals by Combining Computational Chemistry with Experimentation14Predicting the Melting Point of Energetic Molecules Using a Learnable Graph Neural Fingerprint Model19Identifying the determining factors of detonation properties for linear nitroaliphatics with high-throughput computation and machine learning13Multi-type Features Graph Neural Networks for Cocrystals Prediction using API-Coformers Interactions0Pharmaceutical Cocrystal Discovery via 3D-SMINBR: A New Network Recommendation Tool Augmented by 3D Molecular Conformations4Recent Advances in Co-Former Screening and Formation Prediction of Multicomponent Solid Forms of Low Molecular Weight Drugs52HMM-GDAN: Hybrid multi-view and multi-scale graph duplex-attention networks for drug response prediction in cancer19QSPR models for sublimation enthalpy of energetic compounds18A novel energetic cocrystal of DATNBI/TNT with low sensitivity and an unexpected polymorphic transition5In silico co-crystal design: Assessment of the latest advances21Graph Comparison of Molecular Crystals in Band Gap Prediction Using Neural Networks22Speeding Up the Cocrystallization Process: Machine Learning-Combined Methods for the Prediction of Multicomponent Systems35Machine Learning Prediction of Flavonoid Cocrystal Formation Combined with Experimental Validation12Advances of machine learning in materials science: Ideas and techniques105AI-enhanced chemical paradigm: From molecular graphs to accurate prediction and mechanism45Computational screening for prediction of co-crystals: method comparison and experimental validation30Enhancing chemistry-intuitive feature learning to improve prediction performance of optical properties16Cocrystals of polynitrogen compounds as a basis for promising energetic materials: crystal structure prediction methods, their experimental verification, and evaluation of cocrystal properties8Efficient cocrystal coformer screening based on a Machine learning Strategy: A case study for the preparation of imatinib cocrystal with enhanced physicochemical properties35Machine Learning-Guided Prediction of Cocrystals Using Point Cloud-Based Molecular Representation25PocketFlow is a data-and-knowledge-driven structure-based molecular generative model94Prediction of impact sensitivity and electrostatic spark sensitivity for energetic compounds by machine learning and density functional theory16Review on automated 2D material design10Artificial Intelligence Assisted Pharmaceutical Crystallization26Leveraging Deep Chemical Language Processing for Co-crystal Prediction0Cocrystal Prediction of Nifedipine Based on the Graph Neural Network and Molecular Electrostatic Potential Surface4A Comprehensive Review on Theoretical Screening Methods for Pharmaceutical Cocrystals28SGNN-T: Space graph neural network coupled transformer for molecular property prediction4Integrative residue-intuitive machine learning and MD Approach to Unveil Allosteric Site and Mechanism for β2AR31Understanding the Key Factors for Photoinduced Radical Generation in Crystalline Triphenylamines Using Experiment and Machine Learning1Recent Advances of Organic Cocrystals in Emerging Cutting‐Edge Properties and Applications82Recent Advances of Organic Cocrystals in Emerging Cutting‐Edge Properties and Applications19Cocrystal Prediction Tool (CCPT): A Web Server for Deep Learning-Assisted Cocrystal Screening and Density Evaluation5Interpretable and Physicochemical-Intuitive Deep Learning Approach for the Design of Thermal Resistance of Energetic Compounds6CMSSP: A Contrastive Mass Spectra-Structure Pretraining Model for Metabolite Identification19DVL-CC: A Novel Dual-View Learning Framework for Compound Cocrystal Prediction Boosted by View Consistency and Complementarity0Graph-based intermolecular interaction prediction enables rational design of co-crystals3High-throughput encapsulated nanodroplet screening for accelerated co-crystal discovery5Hybrid computational approaches for accurate crystalline density prediction of cyclo -pentazolate salts2Recent developments on co-crystal polymorphs: from formation to prediction9SVCPI: A Soft Voting Ensemble-Based Model for Compound-Protein Interaction Prediction2Exploring Coformer Substitution in Cocrystallization: Griseofulvin and Phenol Derivatives7DTF-diffusion: A 3D equivariant diffusion generation model based on ligand-target information fusion5Cocry-pred: A Dynamic Resource Propagation Method for Cocrystal Prediction2Cocrystal Formation Prediction: Hybrid GIN-Mordred Model Outperforms DFT-Based Methods7Caprolactam Cocrystals: Bridging Virtual Screening to Experimental Solid-State Forms and Stability1Recent advances in pharmaceutical cocrystal design: leveraging in-silico technologies for enhanced drug development0Virtual Screening of Pharmaceutical Cocrystals Using Machine Learning Algorithms10Deep Supramolecular Language Processing for Co‐Crystal Prediction2Deep Supramolecular Language Processing for Co‐Crystal Prediction12Study on the performance and efficient preparation of an ADN-based cocrystal by acoustic resonance mixing technology6Resources for Accelerating Medicine Discovery0Ammonium Organosulfonates as Machine Learning-Driven “Crystallization Cocktails” for the Structure Determination of Liquid Molecules2From Binary to Higher‐Order Organic Cocrystals: Design Principles and Performance Optimization4From Binary to Higher‐Order Organic Cocrystals: Design Principles and Performance Optimization16Synergistically enhanced safety and energy density of energetic materials via interfacial constraint6Farthest point sampling in property designated chemical feature space as an effective strategy for enhancing the machine learning model performance for small scale chemical dataset9MFPLI: A Computational Framework for Assessing Biological Authenticity of Protein-Ligand Interactions Using Molecular Fingerprints and Structural Features0Integrating AI into OLED material design: a comprehensive review of computational frameworks, challenges, and opportunities16A Combined Experimental and Modeling Workflow to Tune Surface Properties of Organic Materials via Cocrystallization8The Structural Regulation and Properties of Energetic Materials: A Review10The Structure of Nitro‐ and Polynitropyrazoles: X‐Ray Crystallography Versus Theoretical Calculations5Ever-Increasing Role of Computational Tools in Solid-State Pharmaceutics: Advancing Drug Development with Enhanced Molecular Understanding and Risk Assessment7Data-efficient Machine Learning for Polymer Informatics12Machine learning-driven discovery of multicomponent pharmaceutical solid forms via DualNet: confidence-aware prediction and ranking of salts and cocrystals6From traditional screening to machine learning facilitated development of pharmaceutical cocrystals0Compound Cocrystal Prediction via Dual-View Learning Framework Under Adversarial Consistency and Complementarity Constraints0Interpretable machine learning for solvent prediction and mechanistic insights in multi-component crystal screening5Cocrystal Network-Based Recommendation: A Multi-Objective Random Walk-Based Network Model for Virtual Screening of Drug–Drug Cocrystals1Data-Driven Discovery of Polar Organic Cocrystals: Integration of Machine Learning and Automated Screening10Screening and validation of Sinomenine hydrochloride deep eutectic solvents ligand based on machine learning algorithm1Smart organic cocrystals: Recent advances and perspectives14Hydrogen bond strength for riparins (I-III) cocrystals with carboxylic acid group coformers: ESP, QTAIM, and NBO analytical screening0Crystal engineering for poorly water-soluble drugs: From design to applications14Discovery of energetic ionic cocrystals via high-throughput virtual screening4Quality by Computational Design: Harnessing AI to Advance Rational Drug Development12Graph neural networks for soft sensors: Learning from process topology and operational data4Autonomous Laboratory Planning Agent for Solid-State Form Selection and Polymorph Screening0Choosing Co-Crystal Partners for Plant-Derived Drug Candidates Using Molecular Complementarity, Solid-State Interactions, Solubility Gain, and Developability Constraints0Development and applications of epitaxial heterostructures based on organic nanowires0Statistical integration of knowledge-based, artificial intelligence, and thermodynamic models for rational in silico coformer selection: A case study on an NSAID-skeletal muscle relaxant system0A federated graph learning method to realize multi-party collaboration for molecular discovery3Multi-modal feature fusion graph neural networks for intelligent classification of pharmaceutical solid forms: Cocrystals, salts, and physical mixtures1Artificial intelligence for energetic materials: design on the levels of molecule, crystal and composite2Property-Driven Cocrystal Discovery via Gaussian Processes and Active Learning2A Multimodal Semi-Supervised Learning Framework for Pharmaceutical Cocrystals Prediction0Explainable Machine Learning for Efficient Cocrystal Prediction: Leveraging Morgan Fingerprints to Decode Local Structure-Cocrystal Formation Relationships1Explainable machine learning prediction model and experimental verification of pharmaceutical multicomponent crystals0Systematic Cocrystal Exploration with a Methylation Homologue Series: Diclofenac with Glycine, Sarcosine, N , N -Dimethylglycine, and Betaine0Rational High-Throughput Screening of Cocrystals: An Explainable Deep Learning Framework Based on Morgan Fingerprints and Cross-Attention0A Multimodal Semi-Supervised Learning Framework for Pharmaceutical Cocrystals Prediction1Rational design and preparation of sorafenib Co-amorphous systems based on explainable Machine learning and quantum chemistry1Accelerating pharmaceutical cocrystal discovery via in silico screening: prediction of formation and properties0Adaptive Data Splitting Strategy to Enhance Knowledge Learning for Phosphorescence Lifetime Prediction0Machine learning strategies integrating knowledge transfer and a cascaded framework: Guiding the discovery of NIR-II organic cocrystals0Rational Coformer Screening of Multicomponent Crystals of Abiraterone Acetate Using Machine Learning (ML) and Multicomponent Hydrogen Bond Propensity (MCHBP): A Comprehensive Structural and Computational Investigation0Crystal engineering and crystal structure prediction0Transfer learning-based multimodal prediction for efficient screening of afatinib co-amorphous systems0

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