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RESEARCH PAPER · The Journal of Physical Chemistry B · 2018

Statistical Learning of Discrete States in Time Series

Hao Li, Haw Yang

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33 direct citing papers in this saved network. Explore the next layer with second-order citations.

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42 direct citing works

Statistical Learning of Discrete States in Time SeriesOriginalPhotobleaching statistics in single-molecule on-/off-time distributions9Molecular Orientation Determination in Nanodiscs at the Single-Molecule Level7Top-down machine learning approach for high-throughput single-molecule analysis47Prior-Apprised Unsupervised Learning of Subpixel Curvilinear Features in Low Signal/Noise Images2Unconventional Blinking Characteristics of Single Quantum Dots Revealed by Timing Analyses8Generalizing HMMs to Continuous Time for Fast Kinetics: Hidden Markov Jump Processes32Intermittency of CsPbBr$_3$ perovskite quantum dots analyzed by an unbiased statistical analysis1A Python Toolbox for Unbiased Statistical Analysis of Fluorescence Intermittency of Multilevel Emitters16Intermittency of CsPbBr3 Perovskite Quantum Dots Analyzed by an Unbiased Statistical Analysis15ABEL-FRET: tether-free single-molecule FRET with hydrodynamic profiling57Fast Lifetime Blinking in Compact CdSe/CdS Core/Shell Quantum Dots9Nonlinear measurements of kinetics and generalized dynamical modes. I. Extracting the one-dimensional Green’s function from a time series4CATBOSS: Cluster Analysis of Trajectories Based on Segment Splitting15Joint Detection of Change Points in Multichannel Single-Molecule Measurements6Amplifying Intermolecular Events by Streptavidin-Induced Proximity3Single-molecule counting applied to the study of GPCR oligomerization15Parabolic Potential Surfaces Localize Charge Carriers in Nonblinking Long-Lifetime “Giant” Colloidal Quantum Dots8Strategies and experimental tips for optimized quantitative single-molecule studies of membrane and membrane-associated proteins0Single‐molecule localization microscopy goes quantitative11Fluorescence Intermittency of Quantum Dot–Organic Dye Conjugates: Implications for Alternative Energy and Biological Imaging6Rapid, Accurate Classification of Single Emitters in Various Conditions and Environments for Blinking-Based Multiplexing4Efficient, nonparametric removal of noise and recovery of probability distributions from time series using nonlinear-correlation functions: Additive noise6Extract latent features of single-particle trajectories with historical experience learning11Trajectory Statistical Learning of the Potential Mean of Force and Diffusion Coefficient from Molecular Dynamics Simulations2Ligand Equilibrium Influences Photoluminescence Blinking in CsPbBr3: A Change Point Analysis of Widefield Imaging Data32Efficient, nonparametric removal of noise and recovery of probability distributions from time series using nonlinear-correlation functions: Photon and photon-counting noise2Competition among recombination pathways in single FAPbBr3 nanocrystals11Advanced analysis of single-molecule spectroscopic data2Fluorescence Lifetime Imaging Microscopy: Advances in Materials Science Research8An Integrative Statistical Approach for Analyzing Photoluminescence Fluctuations in Single CsPbBr3 Quantum Dots2Nonparametric analysis of noisy, multivariable time series using high-order correlation functions: Single-molecule FRET as an example1Unveiling hidden intermediate states in protein folding with AI-based conditional transition clustering2Power-dependent single-molecule dynamics of dark quencher blinking in QSY9/Cy3B: Diffusion-binding experiment and theory0

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  1. Photobleaching statistics in single-molecule on-/off-time distributions

    The Journal of Chemical Physics · 2019-11-01

    Haw Yang, Hao Li, Tao Liu

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  2. Molecular Orientation Determination in Nanodiscs at the Single-Molecule Level

    Analytical Chemistry · 2019-12-18

    Tyler Camp, Kritika Mehta, Stephen G. Sligar, Kai Zhang

    Read original paper ↗ ·

  3. Top-down machine learning approach for high-throughput single-molecule analysis

    eLife · 2020-04-08

    David S. White, Marcel P Goldschen-Ohm, Randall H. Goldsmith, Baron Chanda

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  4. Prior-Apprised Unsupervised Learning of Subpixel Curvilinear Features in Low Signal/Noise Images

    Biophysical Journal · 2020-04-19

    Shuhui Yin, Ming Tien, Haw Yang

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  5. Unconventional Blinking Characteristics of Single Quantum Dots Revealed by Timing Analyses

    The Journal of Physical Chemistry C · 2020-12-24

    Yonglei Sun, Jing Zhao

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  6. Generalizing HMMs to Continuous Time for Fast Kinetics: Hidden Markov Jump Processes

    Biophysical Journal · 2021-01-07

    Zeliha Kilic, Ioannis Sgouralis, Steve Pressé

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  7. Intermittency of CsPbBr$_3$ perovskite quantum dots analyzed by an unbiased statistical analysis

    arXiv (Cornell University) · 2021-02-18

    Isabelle M. Palstra, Ilse Maillette de Buy Wenniger, Biplab Kumar Patra, Erik Christian Garnett, A. Femius Koenderink

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  8. A Python Toolbox for Unbiased Statistical Analysis of Fluorescence Intermittency of Multilevel Emitters

    The Journal of Physical Chemistry C · 2021-05-20

    Isabelle M. Palstra, A. Femius Koenderink

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  9. Intermittency of CsPbBr3 Perovskite Quantum Dots Analyzed by an Unbiased Statistical Analysis

    The Journal of Physical Chemistry C · 2021-05-20

    Isabelle M. Palstra, Ilse Maillette de Buy Wenniger, Biplab Kumar Patra, Erik Christian Garnett, A. Femius Koenderink

    Read original paper ↗ ·

  10. ABEL-FRET: tether-free single-molecule FRET with hydrodynamic profiling

    Nature Methods · 2021-06-14

    Hugh Wilson, Quan Wang

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  11. Fast Lifetime Blinking in Compact CdSe/CdS Core/Shell Quantum Dots

    The Journal of Physical Chemistry C · 2021-07-13

    Yonglei Sun, Hua Zhu, Na Jin, Ou Chen, Jing Zhao

    Read original paper ↗ ·

  12. Nonlinear measurements of kinetics and generalized dynamical modes. I. Extracting the one-dimensional Green’s function from a time series

    The Journal of Chemical Physics · 2021-07-14

    Stuart R. Hodge, Mark A. Berg

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  13. CATBOSS: Cluster Analysis of Trajectories Based on Segment Splitting

    Journal of Chemical Information and Modeling · 2021-10-05

    Jovan Damjanovic, James M. Murphy, Yu‐Shan Lin

    Read original paper ↗ ·

  14. Joint Detection of Change Points in Multichannel Single-Molecule Measurements

    The Journal of Physical Chemistry B · 2021-12-06

    Hugh Wilson, Quan Wang

    Read original paper ↗ ·

  15. Amplifying Intermolecular Events by Streptavidin-Induced Proximity

    Journal of the American Chemical Society · 2022-06-17

    Hao Li, Tao Liu, Haw Yang

    Read original paper ↗ ·

  16. Single-molecule counting applied to the study of GPCR oligomerization

    Biophysical Journal · 2022-08-03

    Joshua N. Milstein, Daniel F. Nino, Xiaohan Zhou, Claudiu C. Gradinaru

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  17. Parabolic Potential Surfaces Localize Charge Carriers in Nonblinking Long-Lifetime “Giant” Colloidal Quantum Dots

    Nano Letters · 2022-12-01

    Marcell Pálmai, Joseph S. Beckwith, Nyssa T. Emerson, Tian Zhao, Eun Byoel Kim, Shuhui Yin, Prakash Kumar Parajuli, Kyle Tomczak, Kai Wang, Bibash Sapkota, Ming Tien, Nan Jiang, Robert F. Klie, Haw Yang, Preston Todd Snee

    Read original paper ↗ ·

  18. Strategies and experimental tips for optimized quantitative single-molecule studies of membrane and membrane-associated proteins

    bioRxiv (Cold Spring Harbor Laboratory) · 2022-12-15

    Raffaella Magrassi, Alessandra Picollo, Alberto Diaspro, Francesca Cella Zanacchi

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  19. Single‐molecule localization microscopy goes quantitative

    Microscopy Research and Technique · 2023-01-04

    Silvia Scalisi, Dario Pisignano, Francesca Cella Zanacchi

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  20. Fluorescence Intermittency of Quantum Dot–Organic Dye Conjugates: Implications for Alternative Energy and Biological Imaging

    The Journal of Physical Chemistry Letters · 2023-04-06

    Hashini B. Chandrasiri, Haoran Jing, Thilini Perera, Ying Hu, Preston Todd Snee

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  21. Rapid, Accurate Classification of Single Emitters in Various Conditions and Environments for Blinking-Based Multiplexing

    The Journal of Physical Chemistry A · 2023-04-06

    Grayson R. Hoy, Grace A. DeSalvo, Sophia H. Haile, Emma N. Smith, Kristin L. Wustholz

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  22. Efficient, nonparametric removal of noise and recovery of probability distributions from time series using nonlinear-correlation functions: Additive noise

    The Journal of Chemical Physics · 2023-08-02

    Mainak Dhar, Joseph Dickinson, Mark A. Berg

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  23. Extract latent features of single-particle trajectories with historical experience learning

    Biophysical Journal · 2023-10-27

    Yongyu Zhang, Feng Ge, Xijian Lin, Jianfeng Xue, Yuxin Song, Hao Xie, Yan He

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  24. Trajectory Statistical Learning of the Potential Mean of Force and Diffusion Coefficient from Molecular Dynamics Simulations

    The Journal of Physical Chemistry B · 2024-01-02

    Yi-Tsao Chen, Haw Yang, Jhih‐Wei Chu

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  25. Ligand Equilibrium Influences Photoluminescence Blinking in CsPbBr3: A Change Point Analysis of Widefield Imaging Data

    ACS Nano · 2024-07-10

    Shaun M. Gallagher, Jessica Kline, Farzaneh Jahanbakhshi, James C. Sadighian, Ian Lyons, Gillian Shen, Benjamin F. Hammel, Sadegh Yazdi, Gordana Duković, Andrew M. Rappe, David S. Ginger

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  26. Efficient, nonparametric removal of noise and recovery of probability distributions from time series using nonlinear-correlation functions: Photon and photon-counting noise

    The Journal of Chemical Physics · 2024-07-19

    Mainak Dhar, Mark A. Berg

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  27. Competition among recombination pathways in single FAPbBr3 nanocrystals

    The Journal of Chemical Physics · 2024-08-01

    Prajit Kumar Singha, Tamoghna Mukhopadhyay, Ejaj Tarif, Fariyad Ali, Anindya Datta

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  28. Advanced analysis of single-molecule spectroscopic data

    Biophysical Reports · 2024-08-02

    Joshua L. Botha, Bertus van Heerden, Tjaart P. J. Krüger

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  29. Fluorescence Lifetime Imaging Microscopy: Advances in Materials Science Research

    Chemistry of Materials · 2025-05-27

    Fariyad Ali, Subhankar Kundu

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  30. An Integrative Statistical Approach for Analyzing Photoluminescence Fluctuations in Single CsPbBr3 Quantum Dots

    The Journal of Physical Chemistry C · 2025-09-12

    Hawi N. Nyiera, Xin Ping Ou Yang, Yonglei Sun, Junyu Wang, Yejing Liu, Ou Chen, Kun Chen, Jing Zhao

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  31. Nonparametric analysis of noisy, multivariable time series using high-order correlation functions: Single-molecule FRET as an example

    The Journal of Chemical Physics · 2025-11-14

    Mainak Dhar, Mark A. Berg

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  32. Unveiling hidden intermediate states in protein folding with AI-based conditional transition clustering

    Proceedings of the National Academy of Sciences · 2026-03-06

    Xuyang Liu, Wensheng Cai, Haohao Fu, Xueguang Shao

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  33. Power-dependent single-molecule dynamics of dark quencher blinking in QSY9/Cy3B: Diffusion-binding experiment and theory

    The Journal of Chemical Physics · 2026-04-02

    Hao Li, Kaushik Sengupta, Jhih‐Wei Chu, Preston Todd Snee, Haw Yang

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