Papers citing Understanding Colour Tuning Rules and Predicting Absorption Wavelengths of Microbial Rhodopsins by Data-Driven Machine-Learning Approach
Blue-shifted ancyromonad channelrhodopsins for multiplex optogenetics
eLife · 2025-05-09
Elena G. Govorunova, Oleg A. Sineshchekov, Hai Li, Yueyang Gou, Hongmei Chen, Shuyuan Yang, Yumei Wang, Stephen Mitchell, Alyssa Palmateer, Leonid S. Brown, François St-Pierre, Mingshan Xue, John L. Spudich
Read original paper ↗ ·Two Decades of Optogenetic Tools: A Retrospective and a Look Ahead
Advanced Genetics · 2025-09-01
Xiao Duan, Mo Zhu, Shiqiang Gao
Read original paper ↗ ·Blue-shifted ancyromonad channelrhodopsins for multiplex optogenetics
eLife · 2025-09-02
Elena G. Govorunova, Oleg A. Sineshchekov, Hai Li, Yueyang Gou, Hongmei Chen, Shuyuan Yang, Yumei Wang, Stephen Mitchell, Alyssa Palmateer, Leonid S. Brown, François St-Pierre, Mingshan Xue, John L. Spudich
Read original paper ↗ ·Blue-shifted ancyromonad channelrhodopsins for multiplex optogenetics
eLife · 2025-09-08
Elena G. Govorunova, Oleg A. Sineshchekov, Hai Li, Yueyang Gou, Hongmei Chen, Shuyuan Yang, Yumei Wang, Stephen Mitchell, Alyssa Palmateer, Leonid S. Brown, François St-Pierre, Mingshan Xue, John L. Spudich
Read original paper ↗ ·Functional characterization of red-shifted rhodopsin channels from giant viruses explored by a machine-learning model for long-wavelength optogenetics
bioRxiv (Cold Spring Harbor Laboratory) · 2025-09-17
Shunki Takaramoto, Chenxiang Zhao, Masayuki Karasuyama, Frederik Schulz, Masaya Watanabe, Yuma Kawasaki, Takashi Nagata, Masae Konno, Naoya Morimoto, Masahiro Fukuda, Yu Inatsu, Hiromu Yawo, Oded Béjà, Hideaki E. KATO, Tanja Woyke, Ichiro Takeuchi, Keiichi Inoue
Read original paper ↗ ·Following Flavin’s Vibrational Modes to Probe Anharmonicities and Low-Lying Conical Intersections
The Journal of Physical Chemistry B · 2025-12-06
Vy Vu, Samer Gozem
Read original paper ↗ ·FLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications
bioRxiv (Cold Spring Harbor Laboratory) · 2026-02-24
Kieran Didi, Sarah Alamdari, Alex Xijie Lu, Bruce J. Wittmann, Kadina E. Johnston, Ava P. Amini, Ali Madani, Maya Czeneszew, Christian Dallago, Kevin K. Yang
Read original paper ↗ ·Accessible and robust machine learning approaches to improve the opsin genotype-phenotype map
Molecular Biology and Evolution · 2026-06-01
Seth A Frazer, Todd H. Oakley
Read original paper ↗ ·Computational design of microbial and animal rhodopsin soluble analogues
bioRxiv (Cold Spring Harbor Laboratory) · 2026-06-29
Alexander T. Hilditch, Casper A. Goverde, Natalia Gasilova, Sarah Carina Warrelmann, Nicolas Manuel Goldbach, Josef Wachtveitl, Laure Menin, Bruno E. Correia
Read original paper ↗ ·AI-enabled rhodopsin design for blue-light enhanced bacterial growth
bioRxiv (Cold Spring Harbor Laboratory) · 2026-06-30
Haris Saeed, Michael Lewis, Takayoshi Fujiwara, Jek Huang, Masae Konno, Kaho MORI, Susumu Yoshizawa, Keiichi Inoue, Tiezheng Pan, Yun Wang, Aidong Yang, Wei E. Huang
Read original paper ↗ ·Rhobot-Screen: an integrated robotic platform for functional screening of rhodopsin variants
BMC Biology · 2026-08-05
Takashi Nagata, Masae Konno, Daisuke R. Hashimoto, Keiichi Inoue
Read original paper ↗ ·