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RESEARCH PAPER · Scientific Reports · 2017

Predicting the outcomes of organic reactions via machine learning: are current descriptors sufficient?

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Predicting the outcomes of organic reactions via machine learning: are current descriptors sufficient?OriginalAutomating drug discovery895Towards operando computational modeling in heterogeneous catalysis250Discovery and Enumeration of Organic‐Chemical and Biomimetic Reaction Cycles within the Network of Chemistry18Discovery and Enumeration of Organic‐Chemical and Biomimetic Reaction Cycles within the Network of Chemistry5Predicting reaction performance in C–N cross-coupling using machine learning1050Feasibility of Activation Energy Prediction of Gas‐Phase Reactions by Machine Learning56Machine Learning for Organic Synthesis: Are Robots Replacing Chemists?74Maschinelles Lernen für die organische Synthese: Ersetzen Roboter Chemiker?8Machine Learning in Computer-Aided Synthesis Planning703Linguistic measures of chemical diversity and the “keywords” of molecular collections53Determining influential descriptors for polymer chain conformation based on empirical force-fields and molecular dynamics simulations37Perturbation-Theory and Machine Learning (PTML) Model for High-Throughput Screening of Parham Reactions: Experimental and Theoretical Studies42Toward Predicting Efficiency of Organic Solar Cells via Machine Learning and Improved Descriptors258Predictive models for kinetic and thermodynamic parameters of reactions0Concluding Remarks and Perspectives0Prediction of Chemical Reactions Using Statistical Models of Chemical Knowledge4Prediction of Chemical Reactions Using Statistical Models of Chemical Knowledge0Prediction of Major Regio‐, Site‐, and Diastereoisomers in Diels–Alder Reactions by Using Machine‐Learning: The Importance of Physically Meaningful Descriptors146Prediction of Major Regio‐, Site‐, and Diastereoisomers in Diels–Alder Reactions by Using Machine‐Learning: The Importance of Physically Meaningful Descriptors22Improving Vibrational Mode Interpretation Using Bayesian Regression106Computational design of syntheses leading to compound libraries or isotopically labelled targets29Designing promising molecules for organic solar cells via machine learning assisted virtual screening115Reaction Conditions Data Mining : The application of Machine Learning towards predicting the future of process development0Selection of cost-effective yet chemically diverse pathways from the networks of computer-generated retrosynthetic plans75Machine Learning for Understanding Compatibility of Organic–Inorganic Hybrid Perovskites with Post-Treatment Amines112Prediction of higher-selectivity catalysts by computer-driven workflow and machine learning678An Introduction to Closed‐Loop Process Optimization and Online Analysis3Computational Ligand Descriptors for Catalyst Design406Enhancing Acute Oral Toxicity Predictions by using Consensus Modeling and Algebraic Form-Based 0D-to-2D Molecular Encodes29Identifying Physico-Chemical Laws from the Robotically Collected Data0Identifying Physico-Chemical Laws from the Robotically Collected Data0Synthetic organic chemistry driven by artificial intelligence303Rational Design of Continuous Flow Processes for Synthesis of Functional Molecules2A new formulation for symbolic regression to identify physico-chemical laws from experimental data64Quantitative Structure–Selectivity Relationships in Enantioselective Catalysis: Past, Present, and Future211Digitising chemical synthesis in automated and robotic flow49A unified machine-learning protocol for asymmetric catalysis as a proof of concept demonstration using asymmetric hydrogenation131Applying machine learning algorithms in estimating the performance of heterogeneous, multi-component materials as oxygen carriers for chemical-looping processes87Identification of the Side Products That Diminish the Yields of the Monoamidated Product in Metal-Catalyzed C–H Amidation of 2-Phenylpyridine with Arylisocyanates11Quantum Chemical Reaction Prediction Method Based on Machine Learning24A Structure-Based Platform for Predicting Chemical Reactivity288Predicting Regioselectivity in Radical C−H Functionalization of Heterocycles through Machine Learning130Predicting Regioselectivity in Radical C−H Functionalization of Heterocycles through Machine Learning24Learning Molecular Representations for Medicinal Chemistry222Machine Learning to Reduce Reaction Optimization Lead Time – Proof of Concept with Suzuki, Negishi and Buchwald-Hartwig Cross-Coupling Reactions4Machine Learning to Reduce Reaction Optimization Lead Time – Proof of Concept with Suzuki, Negishi and Buchwald-Hartwig Cross-Coupling Reactions1Models of necessity13Identification of predictive factors of the degree of adherence to the Mediterranean diet through machine-learning techniques5Peer Review #1 of "Identification of predictive factors of the degree of adherence to the Mediterranean diet through machine-learning techniques (v0.1)"0Peer Review #2 of "Identification of predictive factors of the degree of adherence to the Mediterranean diet through machine-learning techniques (v0.1)"0Peer Review #3 of "Identification of predictive factors of the degree of adherence to the Mediterranean diet through machine-learning techniques (v0.1)"0Peer Review #3 of "Identification of predictive factors of the degree of adherence to the Mediterranean diet through machine-learning techniques (v0.2)"0Peer Review #4 of "Identification of predictive factors of the degree of adherence to the Mediterranean diet through machine-learning techniques (v0.1)"0Peer Review #4 of "Identification of predictive factors of the degree of adherence to the Mediterranean diet through machine-learning techniques (v0.2)"0Computational planning of the synthesis of complex natural products271Chemical data intelligence for sustainable chemistry68Machine learning approaches to understand and predict rate constants for organic processes in mixtures containing ionic liquids27Machine learning prediction of hydrogen atom transfer reactivity in photoredox-mediated C–H functionalization33Reaction-based machine learning representations for predicting the enantioselectivity of organocatalysts105Multilabel Classification Models for the Prediction of Cross-Coupling Reaction Conditions91Transformative Applications of Machine Learning for Chemical Reactions4Chemist Ex Machina: Advanced Synthesis Planning by Computers47Prediction of chemical reaction yields using deep learning291Organic reactivity from mechanism to machine learning175Scaffold‐Directed Face Selectivity Machine‐Learned from Vectors of Non‐covalent Interactions42Scaffold‐Directed Face Selectivity Machine‐Learned from Vectors of Non‐covalent Interactions15Virtual Screening for Chemists0Graph Neural Networks for Predicting Chemical Reaction Performance1Machine Learning for Chemical Reactions437Graph Neural Networks for Predicting Chemical Reaction Performance4Computational Analysis of Synthetic Planning: Past and Future19Reaction Classification and Yield Prediction using the Differential Reaction Fingerprint DRFP9An optimized deep convolutional neural network for yield prediction of Buchwald-Hartwig amination5Leveraging Machine Learning for Enantioselective Catalysis: From Dream to Reality6Reaction Data Curation I: Chemical Structures and Transformations Standardization36Reactions’ Descriptors Selection and Yield Estimation Using Metaheuristic Algorithms and Voting Ensemble1Role of artificial intelligence in chemistry26Automated Exploration of Prebiotic Chemical Reaction Space: Progress and Perspectives21Machine learning modelling of chemical reaction characteristics: yesterday, today, tomorrow13Quantum computing enhanced machine learning for physico-chemical applications2Application of Machine Learning and Reaction Optimization for the Iterative Improvement of Enantioselectivity of Cinchona-Derived Phase Transfer Catalysts27Chemical Reactivity Prediction: Current Methods and Different Application Areas17A transfer learning protocol for chemical catalysis using a recurrent neural network adapted from natural language processing37N-SVRG: Stochastic Variance Reduction Gradient with Noise Reduction Ability for Small Batch Samples3Quantum machine learning for chemistry and physics151Reaction classification and yield prediction using the differential reaction fingerprint DRFP178The effect of chemical representation on active machine learning towards closed-loop optimization55Machine Learning May Sometimes Simply Capture Literature Popularity Trends: A Case Study of Heterocyclic Suzuki–Miyaura Coupling189Computer-designed repurposing of chemical wastes into drugs86Machine Learning for Chemical Reactivity: The Importance of Failed Experiments217Maschinelles Lernen zur Vorhersage chemischer Reaktivität: Die Bedeutung “gescheiterter” Experimente8Machine Learning Prediction of Structure‐Performance Relationship in Organic Synthesis16Network search algorithms and scoring functions for advanced‐level computerized synthesis planning18Mechanistic Inference from Statistical Models at Different Data-Size Regimes37Artificial Intelligence for Retrosynthesis Prediction92Reaxtica: A knowledge-guided machine learning platform for fast and accurate reaction selectivity and yield prediction0Reaxtica: A knowledge-guided machine learning platform for fast and accurate reaction selectivity and yield prediction1Advancing molecular graphs with descriptors for the prediction of chemical reaction yields20DNN-PP: A novel Deep Neural Network approach and its applicability in drug-related property prediction25Closed-loop optimization of general reaction conditions for heteroaryl Suzuki-Miyaura coupling208Artificial intelligence in oncological therapies2Inventorship in the Age of Artificial Intelligence2On the use of real-world datasets for reaction yield prediction141Synthesize in a Smart Way: A Brief Introduction to Intelligence and Automation in Organic Synthesis1Machine Learning C–N Couplings: Obstacles for a General-Purpose Reaction Yield Prediction48Critical assessment of synthetic accessibility scores in computer-assisted synthesis planning103Benchmark of general-purpose machine learning-based quantum mechanical method AIQM1 on reaction barrier heights24Molecular Machine Learning for Chemical Catalysis: Prospects and Challenges88Global reactivity models are impactful in industrial synthesis applications15A Machine Learning Approach to Model Interaction Effects: Development and Application to Alcohol Deoxyfluorination23Toxicity prediction using target, interactome, and pathway profiles as descriptors21Transform Descriptors for template free reaction classification1A deep learning framework for accurate reaction prediction and its application on high-throughput experimentation data46Extraction Yield Prediction for the Large-Scale Recovery of Botanicals1Machine learning approach for predicting the yield of pyrroles and dipyrromethanes condensation reactions with aldehydes13Extraction yield prediction for the large-scale recovery of cannabinoids6A machine learning approach for predicting the reactivity power of hypervalent iodine compounds7Integrating QSAR modelling and deep learning in drug discovery: the emergence of deep QSAR397When Yield Prediction Does Not Yield Prediction: An Overview of the Current Challenges64Advancing 2D material predictions: superior work function estimation with atomistic line graph neural networks8Every atom counts: predicting sites of reaction based on chemistry within two bonds0Navigating the landscape of enzyme design: from molecular simulations to machine learning155Artificial Intelligence for Retrosynthetic Planning Needs Both Data and Expert Knowledge34Computational synthesis design for controlled degradation and revalorization9Application and Prospect of Machine Learning in the Field of Materials and Chemical Engineering1Reproducing Reaction Mechanisms with Machine‐Learning Models Trained on a Large‐Scale Mechanistic Dataset13Reproducing Reaction Mechanisms with Machine‐Learning Models Trained on a Large‐Scale Mechanistic Dataset46‐Hydroxy Picolinohydrazides Promoted Cu(I)‐Catalyzed Hydroxylation Reaction in Water: Machine‐Learning Accelerated Ligands Design and Reaction Optimization46‐Hydroxy Picolinohydrazides Promoted Cu(I)‐Catalyzed Hydroxylation Reaction in Water: Machine‐Learning Accelerated Ligands Design and Reaction Optimization24Leveraging graph neural networks to predict Hammett’s constants for benzoic acid derivatives7Estimation of multicomponent reactions’ yields from networks of mechanistic steps12Systematic, computational discovery of multicomponent and one-pot reactions24Predicting reaction conditions: a data-driven perspective10Predicting and Explaining Yields with Machine Learning for Carboxylated Azoles and Beyond6C–H Aminoalkylation of 5-Membered Heterocycles: Influence of Descriptors, Data Set Size, and Data Quality on the Predictiveness of Machine Learning Models and Expansion of the Substrate Space Beyond 1,3-Azoles1Advancements in Machine Learning Predicting Activation and Gibbs Free Energies in Chemical Reactions2A molecular descriptor-based correlation with the composition of acid-pretreated cornstalk cultivation medium for biohydrogen production using a machine learning approach6Exploring BERT for Reaction Yield Prediction: Evaluating the Impact of Tokenization, Molecular Representation, and Pretraining Data Augmentation9Predicting Reactivity with Machine Learning1Inter‐Hammett: Enhancing Interpretability in Hammett‘s Constant Prediction via Extracting Rules1Graph Neural Networks in Modern AI-Aided Drug Discovery87Robot-assisted mapping of chemical reaction hyperspaces and networks15Prioritizing Data Quality in Machine Learning for Thermophysical Property Prediction: A Case Study on Normal Boiling Points of Organic Compounds2Design and Experimental Validation of a Photocatalyst Recommender Based on a Large Language Model0Design and Experimental Validation of a Photocatalyst Recommender Based on a Large Language Model6Battery real-time power monitoring and control in automotive embedded systems0TransGAT-DTA: A multi-task framework for drug–target affinity prediction and conditional molecule generation1Multi-to-uni modal knowledge transfer pre-training for molecular representation learning5ReactionSeek: LLM-powered literature data mining and knowledge discovery in organic synthesis7A dynamic patching LLM framework for adaptive yield trend prediction0

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